Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs79185748 chr5:147046824 A/G 4.13E-7 366 20.05 16.2 4.67 KM Plot
LIHC rs7924705 chr11:73505036 G/A 2.58E-6 364 19.27 21.2 1.87 KM Plot
LIHC rs7931143 chr11:73548991 G/A 3.31E-6 368 19.5 20.48 1.87 KM Plot
LIHC rs79325961 chr6:169934196 T/C 8.52E-6 365 19.83 19.13 4.27 KM Plot
LIHC rs79457909 chr2:37146764 A/G 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs79493559 chr11:96739128 A/G 1.02E-5 365 20.07 18.6 2.63 KM Plot
LIHC rs79670745 chr6:169954036 A/G 1.33E-5 367 19.87 18.97 4.27 KM Plot
LIHC rs79698165 chr5:147042063 G/A 1.84E-5 365 20.05 16.2 4.25 KM Plot
LIHC rs79704730 chr2:37081649 G/A 1.72E-5 367 20.4 12.17 8.73 KM Plot
LIHC rs79707672 chr6:143242745 T/A 4.75E-5 365 20.03 18.48 3.37 KM Plot
LIHC rs79791402 chr5:147050520 C/T 4.13E-7 366 20.05 16.2 4.67 KM Plot
LIHC rs79797517 chr11:107173777 T/C 8.32E-6 366 19.83 19.17 1.87 KM Plot
LIHC rs79857980 chr2:37167746 G/A 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs79974470 chr15:44952927 G/T 2.46E-5 363 20.95 17.83 9.3 KM Plot
LIHC rs80021930 chr2:37224424 C/T 2.36E-5 364 20.27 15.25 8.73 KM Plot